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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
18
ChIP-seq
12
total RNA-seq
1
GRO-seq
Assay category
18
DNA binding
12
Transcription
Target of assay
10
histone
10
histone modification
6
narrow histone mark
5
control
4
broad histone mark
3
transcription factor
Date released
13
February, 2018
9
December, 2017
8
August, 2021
1
January, 2018
Available data
30
bam
25
bigWig
23
fastq
12
bed narrowPeak
12
tsv
3
bed bed3+
Organism
31
Homo sapiens
Biosample type
23
in vitro differentiated cells
8
cell line
Organ
825
pancreas
790
liver
663
connective tissue
490
adipose tissue
429
epithelium
384
heart
331
kidney
283
brain
235
vasculature
230
blood vessel
141
artery
121
limb
87
musculature of body
74
bone element
69
blood
69
bodily fluid
61
eye
43
nerve
31
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
1
adrenal gland
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
thymus
Project
31
AMP
Genome assembly (visualization)
25
GRCh38
25
hg19
1
hg18
Lab
31
AMP-T2D consortium
Audit category:
inconsistent ontology term
Audit category:
1
missing controlled_by
Audit category:
2
inconsistent control read length
month_released!
May, 2021
organ_slims!
esophagus
audit.ERROR.category!
inconsistent ontology term
BIOSAMPLE
ASSAY
31 results
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Clear Filters
ChIP-seq
total RNA-seq
GRO-seq
in vitro differentiated cells
pancreatic endoderm
18
4
1
cell line
H1-hESC
8
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