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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
187
ATAC-seq
158
ChIP-seq
56
snATAC-seq
47
WGBS
31
DNase-seq
10
Hi-C
10
RRBS
1
FAIRE-seq
1
pCHi-C
Assay category
Transcription
275
DNA accessibility
158
DNA binding
57
DNA methylation
10
3D chromatin structure
Target of assay
119
histone
119
histone modification
63
narrow histone mark
56
broad histone mark
29
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
May, 2021
101
May, 2022
100
May, 2020
59
August, 2017
55
June, 2019
46
September, 2018
35
February, 2021
32
October, 2019
13
July, 2019
12
February, 2023
9
November, 2017
8
January, 2021
7
August, 2020
5
May, 2019
5
September, 2017
4
August, 2021
3
October, 2022
3
September, 2020
2
November, 2020
1
March, 2020
1
March, 2023
Available data
260
bam
242
bigWig
168
bed narrowPeak
161
fastq
109
bigBed narrowPeak
101
zippedFastqFolder
49
bed broadPeak
49
bigBed broadPeak
35
bed bed3+
18
tsv
16
tagAlign
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
1
bed bed3
1
tar
Organism
501
Homo sapiens
Biosample type
1548
tissue
530
cell line
501
primary cell
208
in vitro differentiated cells
8
stem cell
Organ
243
epithelium
191
pancreas
35
vasculature
30
kidney
29
blood vessel
23
connective tissue
22
vein
18
brain
12
musculature of body
9
heart
9
liver
8
blood
8
bodily fluid
5
eye
Project
345
AMP
147
HPAP
8
T1D
1
ITG
Genome assembly (visualization)
244
hg19
187
GRCh38
Lab
345
AMP-T2D consortium
147
Klaus Kaestner, Upenn
8
Kyle Gaulton, UCSD
1
ITG
Audit category:
42
inconsistent ontology term
31
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
month_released!
May, 2021
organ_slims!
esophagus
assay_slims!
Transcription
BIOSAMPLE
ASSAY
501 results
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ATAC-seq
ChIP-seq
snATAC-seq
WGBS
DNase-seq
Hi-C
RRBS
FAIRE-seq
pCHi-C
primary cell
pancreatic alpha cell
35
13
31
1
pancreatic beta cell
23
13
16
1
Langerhans cell
48
pancreatic endocrine cell
23
CD4-positive, alpha-beta memory T cell
22
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