Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
109
ATAC-seq
94
total RNA-seq
87
single cell RNA-seq
56
snATAC-seq
47
WGBS
28
ChIP-seq
10
RRBS
6
Hi-C
2
DNase-seq
1
pCHi-C
Assay category
181
Transcription
167
DNA accessibility
57
DNA methylation
28
DNA binding
6
3D chromatin structure
Target of assay
25
control
3
histone
3
histone modification
2
broad histone mark
1
narrow histone mark
Date released
134
May, 2022
88
February, 2023
57
May, 2020
56
September, 2020
46
February, 2021
May, 2021
13
August, 2017
11
October, 2019
9
July, 2019
8
January, 2021
8
June, 2019
3
October, 2022
1
August, 2021
1
March, 2020
1
March, 2023
1
May, 2019
1
November, 2018
1
November, 2020
1
September, 2018
Available data
460
bam
bigWig
409
fastq
218
tsv
168
bed narrowPeak
153
zippedFastqFolder
109
bigBed narrowPeak
49
bed broadPeak
49
bigBed broadPeak
35
bed bed3+
16
tagAlign
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
440
Homo sapiens
Biosample type
1002
tissue
440
primary cell
124
cell line
92
in vitro differentiated cells
7
stem cell
Organ
175
epithelium
154
pancreas
8
blood
8
bodily fluid
8
kidney
8
vasculature
7
blood vessel
7
vein
6
connective tissue
3
heart
3
liver
3
musculature of body
2
eye
1
brain
Project
314
HPAP
117
AMP
8
T1D
1
ITG
Genome assembly (visualization)
19
hg19
4
GRCh38
Lab
314
Klaus Kaestner, Upenn
117
AMP-T2D consortium
8
Kyle Gaulton, UCSD
1
ITG
Audit category:
31
audit script error
15
inconsistent ontology term
month_released!
May, 2021
organ_slims!
esophagus
files.file_type!
bigWig
BIOSAMPLE
ASSAY
440 results
search-icon
table-tab-icon
Clear Filters
ATAC-seq
total RNA-seq
single cell RNA-seq
snATAC-seq
WGBS
ChIP-seq
RRBS
Hi-C
DNase-seq
pCHi-C
primary cell
Langerhans cell
85
48
pancreatic alpha cell
22
42
31
6
1
pancreatic beta cell
13
11
16
6
1
exocrine cell
39
naive thymus-derived CD4-positive, alpha-beta T cell
22
1
+ See 29 more…
See all biosamples
Download