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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
186
single cell RNA-seq
173
ATAC-seq
166
total RNA-seq
126
ChIP-seq
56
snATAC-seq
47
WGBS
31
DNase-seq
10
Hi-C
10
RRBS
2
small RNA-seq
1
FAIRE-seq
1
pCHi-C
Assay category
354
Transcription
261
DNA accessibility
126
DNA binding
57
DNA methylation
10
3D chromatin structure
Target of assay
87
histone
87
histone modification
48
narrow histone mark
39
broad histone mark
32
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
May, 2021
147
May, 2020
134
May, 2022
88
February, 2023
September, 2018
59
August, 2017
59
September, 2020
55
June, 2019
48
February, 2021
48
July, 2018
43
April, 2018
34
October, 2019
31
July, 2019
9
November, 2017
8
January, 2021
7
August, 2020
6
November, 2020
5
December, 2019
5
May, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
June, 2018
3
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
388
bam
370
bigWig
336
fastq
192
tsv
153
zippedFastqFolder
122
bed narrowPeak
95
bigBed narrowPeak
49
bed broadPeak
49
bigBed broadPeak
35
bed bed3+
16
tagAlign
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
1
bed bed3
1
csv
1
tar
Organism
809
Homo sapiens
Biosample type
2736
tissue
809
primary cell
641
cell line
262
in vitro differentiated cells
10
stem cell
Organ
345
epithelium
274
pancreas
38
connective tissue
37
vasculature
36
kidney
31
blood vessel
22
vein
21
brain
14
liver
14
musculature of body
13
heart
8
blood
8
bodily fluid
5
eye
2
adipose tissue
2
artery
1
pericardium
Project
431
AMP
324
HPAP
53
T1D
1
ITG
Genome assembly (visualization)
372
hg19
315
GRCh38
Lab
431
AMP-T2D consortium
324
Klaus Kaestner, Upenn
53
Kyle Gaulton, UCSD
1
ITG
Audit category:
53
inconsistent ontology term
31
audit script error
Audit category:
12
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
month_released!
May, 2021
September, 2018
organ_slims!
esophagus
BIOSAMPLE
ASSAY
809 results
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single cell RNA-seq
ATAC-seq
total RNA-seq
ChIP-seq
snATAC-seq
WGBS
DNase-seq
Hi-C
RRBS
small RNA-seq
FAIRE-seq
pCHi-C
primary cell
Langerhans cell
85
48
pancreatic alpha cell
12
32
42
13
31
1
pancreatic beta cell
12
19
11
13
16
1
exocrine cell
39
naive thymus-derived CD4-positive, alpha-beta T cell
22
1
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