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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
35
ATAC-seq
6
single cell RNA-seq
5
Hi-C
3
total RNA-seq
1
pCHi-C
Assay category
35
DNA accessibility
9
Transcription
5
3D chromatin structure
Date released
35
February, 2023
6
August, 2021
3
February, 2020
3
March, 2020
2
July, 2019
1
October, 2019
Available data
bam
107
bigWig
88
bed narrowPeak
68
tsv
38
bigBed narrowPeak
11
bed bed3+
11
bed broadPeak
11
bigBed broadPeak
6
tagAlign
3
fastq
3
hic
2
bedpe bed3+
2
hdf5
1
bed bedMethyl
1
bigBed bedMethyl
1
tar
Organism
50
Homo sapiens
Biosample type
46
tissue
4
primary cell
Organ
232
pancreas
210
kidney
191
epithelium
162
heart
97
liver
92
bone element
62
connective tissue
54
eye
51
vasculature
50
blood vessel
39
artery
34
brain
29
adipose tissue
27
musculature of body
20
lung
9
blood
9
bodily fluid
8
limb
8
skeleton
5
gonad
5
ovary
2
intestine
2
vein
1
adrenal gland
1
embryo
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
nerve
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
thymus
1
urinary bladder
Project
50
AMP
Genome assembly (visualization)
35
GRCh38
5
hg19
Lab
50
AMP-T2D consortium
Audit category:
1
audit script error
month_released!
May, 2021
target.investigated_as!
broad histone mark
files.file_type!
bam
BIOSAMPLE
ASSAY
50 results
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ATAC-seq
single cell RNA-seq
Hi-C
total RNA-seq
pCHi-C
tissue
coronary artery
35
1
aorta
4
1
1
pulmonary artery
2
ascending aorta
1
tibial artery
1
primary cell
endothelial cell of umbilical vein
2
brain microvascular endothelial cell
1
endothelial cell of hepatic sinusoid
1
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