Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
30
total RNA-seq
14
ChIP-seq
6
MeRIP-seq
3
ATAC-seq
2
Capture-C
1
CRISPR genome editing followed by sgRNA sequencing
1
DNase-seq
1
Hi-C
Assay category
30
Transcription
14
DNA binding
4
DNA accessibility
1
3D chromatin structure
Target of assay
11
histone
11
histone modification
6
broad histone mark
5
control
5
narrow histone mark
3
nucleotide modification
1
RNA binding protein
1
transcription factor
Date released
26
February, 2021
May, 2021
16
November, 2019
6
November, 2020
5
March, 2020
2
August, 2021
2
October, 2019
1
February, 2023
Available data
46
bam
45
bigWig
31
tsv
14
bed narrowPeak
1
bedpe bed3+
1
bigBed narrowPeak
1
hic
Organism
57
Homo sapiens
Biosample type
406
primary cell
58
cell line
19
in vitro differentiated cells
15
tissue
Organ
401
liver
71
pancreas
66
artery
66
blood vessel
66
heart
66
vasculature
61
blood
61
bodily fluid
58
epithelium
19
kidney
8
embryo
1
mammary gland
Project
55
AMP
3
T1D
Genome assembly (visualization)
47
hg19
44
GRCh38
Lab
52
AMP-T2D consortium
6
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
55
inconsistent ontology term
month_released!
May, 2021
BIOSAMPLE
ASSAY
58 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ChIP-seq
MeRIP-seq
ATAC-seq
Capture-C
CRISPR genome editing followed by sgRNA sequencing
DNase-seq
Hi-C
cell line
EndoC_BH1
29
14
6
3
2
1
1
glomerular visceral epithelial cell
1
1
Download