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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
471
total RNA-seq
88
ChIP-seq
42
DNase-seq
5
ATAC-seq
5
small RNA-seq
4
single cell RNA-seq
3
WGBS
Assay category
480
Transcription
88
DNA binding
47
DNA accessibility
3
DNA methylation
Target of assay
47
histone
47
histone modification
40
transcription factor
24
broad histone mark
22
narrow histone mark
10
RNA binding protein
2
chromatin remodeller
1
control
Date released
450
February, 2021
65
August, 2017
56
June, 2019
21
July, 2019
6
November, 2020
5
May, 2019
5
October, 2018
2
April, 2018
2
July, 2018
2
March, 2020
May, 2021
1
May, 2023
1
November, 2018
1
November, 2019
1
October, 2017
Available data
617
bam
614
bigWig
479
tsv
117
bed narrowPeak
75
fastq
71
bigBed narrowPeak
52
bed bed3+
42
bed broadPeak
42
bigBed broadPeak
3
bed bedMethyl
3
bigBed bedMethyl
1
bed bed3
Organism
618
Homo sapiens
Biosample type
522
tissue
53
in vitro differentiated cells
43
primary cell
Organ
592
pancreas
565
connective tissue
531
liver
424
adipose tissue
285
epithelium
263
heart
217
brain
205
kidney
191
vasculature
187
blood vessel
128
artery
96
limb
66
bone element
54
blood
54
bodily fluid
53
musculature of body
31
nerve
27
embryo
18
ureter
16
spleen
12
vein
8
skeleton
6
eye
1
pericardium
1
pituitary gland
Project
618
AMP
Genome assembly (visualization)
661
hg19
618
GRCh38
Lab
618
AMP-T2D consortium
Audit category:
19
inconsistent ontology term
Audit category:
17
missing controlled_by
Audit category:
6
inconsistent control read length
month_released!
May, 2021
BIOSAMPLE
ASSAY
618 results
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total RNA-seq
ChIP-seq
DNase-seq
ATAC-seq
small RNA-seq
single cell RNA-seq
WGBS
tissue
adipose tissue
382
1
2
bone tissue
58
muscle of leg
5
13
1
muscle of arm
17
white adipose tissue
12
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in vitro differentiated cells
adipocyte
4
48
1
primary cell
skeletal muscle satellite cell
1
7
1
osteoblast
5
1
2
cardiac fibroblast
3
3
mesenchymal stem cell
6
pancreatic stellate cell
4
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