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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
57
ChIP-seq
17
total RNA-seq
2
DNase-seq
1
ATAC-seq
1
GRO-seq
Assay category
57
DNA binding
17
Transcription
3
DNA accessibility
Target of assay
36
histone
36
histone modification
20
broad histone mark
18
control
16
narrow histone mark
3
transcription factor
Date released
42
October, 2019
13
December, 2017
13
February, 2018
8
August, 2021
May, 2021
1
February, 2020
1
January, 2018
Available data
76
bam
58
bigWig
41
bed narrowPeak
27
fastq
26
bigBed narrowPeak
17
tsv
5
bed bed3+
2
bed broadPeak
2
bigBed broadPeak
Organism
78
Homo sapiens
Biosample type
43
tissue
27
in vitro differentiated cells
8
cell line
Organ
885
pancreas
791
liver
682
connective tissue
498
epithelium
491
adipose tissue
390
heart
354
kidney
286
brain
236
vasculature
230
blood vessel
158
bone element
artery
122
limb
96
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
35
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
78
AMP
Genome assembly (visualization)
58
GRCh38
58
hg19
1
hg18
Lab
78
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
Audit category:
1
missing controlled_by
Audit category:
3
inconsistent control read length
month_released!
May, 2021
organ_slims!
artery
BIOSAMPLE
ASSAY
78 results
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ChIP-seq
total RNA-seq
DNase-seq
ATAC-seq
GRO-seq
tissue
tibial nerve
35
5
2
1
in vitro differentiated cells
pancreatic endoderm
18
4
1
Hepatic endoderm
4
cell line
H1-hESC
8
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