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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
14
ChIP-seq
3
total RNA-seq
2
pCHi-C
1
DNase-seq
1
RRBS
Assay category
14
DNA binding
3
Transcription
1
DNA accessibility
1
DNA methylation
Target of assay
9
transcription factor
7
recombinant protein
5
control
2
RNA binding protein
histone
2
histone modification
2
narrow histone mark
Date released
13
October, 2019
3
June, 2019
2
March, 2020
2
May, 2019
1
July, 2019
Available data
18
bam
13
bigWig
10
bed narrowPeak
5
tsv
3
bigBed narrowPeak
1
bed bed3+
1
bed bedMethyl
1
bed broadPeak
1
bigBed bedMethyl
1
bigBed broadPeak
Organism
21
Homo sapiens
Biosample type
15
cell line
6
primary cell
Organ
84
bone element
54
epithelium
49
pancreas
21
kidney
11
connective tissue
4
heart
2
embryo
2
musculature of body
1
adipose tissue
1
brain
1
limb
1
liver
1
stomach
1
urinary bladder
1
vasculature
Project
21
AMP
Genome assembly (visualization)
14
hg19
13
GRCh38
Lab
21
AMP-T2D consortium
Audit category:
21
inconsistent ontology term
7
audit script error
month_released!
May, 2021
target.investigated_as!
histone
BIOSAMPLE
ASSAY
21 results
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ChIP-seq
total RNA-seq
pCHi-C
DNase-seq
RRBS
cell line
RCC 7860 HIF1a re-expression
4
1
RCC 7860 vector
3
1
1
RCC 7860 HIF2a over-expression
3
1
RCC 7860 VHL
1
primary cell
epithelial cell of proximal tubule
2
1
1
kidney epithelial cell
2
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