Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
206
DNase-seq
52
single cell RNA-seq
49
ChIP-seq
41
ATAC-seq
41
WGBS
21
snATAC-seq
Assay category
268
DNA accessibility
52
Transcription
49
DNA binding
41
DNA methylation
Target of assay
histone
65
histone modification
49
transcription factor
36
broad histone mark
29
narrow histone mark
9
RNA binding protein
5
chromatin remodeller
1
other context
1
other post-translational modification
Date released
187
June, 2019
134
May, 2022
47
November, 2017
19
September, 2020
9
November, 2018
7
October, 2019
4
August, 2017
1
March, 2019
1
November, 2020
1
October, 2017
Available data
2417
bam
2114
bigWig
1427
tsv
1129
fastq
950
bed narrowPeak
651
bigBed narrowPeak
257
bed broadPeak
255
bigBed broadPeak
246
bed bed3+
161
txt
153
zippedFastqFolder
72
tagAlign
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
23
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
vcf
Organism
410
Homo sapiens
Biosample type
186
primary cell
178
tissue
45
cell line
1
in vitro differentiated cells
Organ
98
epithelium
89
pancreas
78
kidney
49
liver
36
limb
35
brain
33
musculature of body
30
heart
18
ureter
13
vasculature
10
blood vessel
9
connective tissue
4
artery
4
eye
2
adipose tissue
2
nerve
2
vein
1
spleen
Project
257
AMP
153
HPAP
Genome assembly (visualization)
242
GRCh38
233
hg19
Lab
255
AMP-T2D consortium
153
Klaus Kaestner, Upenn
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
4
inconsistent ontology term
Audit category:
2
inconsistent control read length
month_released!
May, 2021
target.investigated_as!
histone
BIOSAMPLE
ASSAY
410 results
search-icon
table-tab-icon
Clear Filters
DNase-seq
single cell RNA-seq
ChIP-seq
ATAC-seq
WGBS
snATAC-seq
primary cell
Langerhans cell
52
21
pancreatic alpha cell
22
25
pancreatic beta cell
13
16
pancreatic acinar cell
4
cardiac fibroblast
3
+ See 22 more…
tissue
heart
18
muscle of arm
17
brain
14
kidney
13
muscle of leg
13
+ See 40 more…
cell line
HepG2
44
Panc1
1
in vitro differentiated cells
adipocyte
1
See all biosamples
Download