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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1005
total RNA-seq
222
ATAC-seq
179
single cell RNA-seq
DNase-seq
87
RNA microarray
27
WGBS
27
snATAC-seq
25
pCHi-C
16
Hi-C
16
small RNA-seq
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
1200
Transcription
DNA binding
253
DNA accessibility
38
DNA methylation
16
3D chromatin structure
Target of assay
2
control
2
nucleotide modification
Date released
545
February, 2021
229
August, 2021
143
May, 2020
120
July, 2018
106
August, 2017
95
February, 2023
77
July, 2019
May, 2022
47
September, 2023
43
October, 2019
40
May, 2021
40
November, 2019
38
March, 2020
25
February, 2020
19
April, 2020
15
May, 2023
8
January, 2021
8
October, 2017
7
November, 2018
6
April, 2018
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
1076
tsv
984
bam
960
bigWig
174
bed narrowPeak
150
txt
123
fastq
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
7
bigBed narrowPeak
6
csv
5
bed bed3
2
bed broadPeak
1
bedpe
Organism
1624
Homo sapiens
Biosample type
1626
tissue
644
primary cell
195
in vitro differentiated cells
176
cell line
7
stem cell
Organ
471
connective tissue
413
adipose tissue
357
pancreas
204
kidney
163
heart
162
liver
158
bone element
55
blood vessel
55
vasculature
51
eye
41
artery
29
brain
20
limb
20
lung
19
musculature of body
16
skeleton
15
epithelium
6
nerve
4
spleen
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
1531
AMP
47
KPMP
29
T1D
19
LungMap
Genome assembly (visualization)
1092
GRCh38
1026
hg19
Lab
1378
AMP-T2D consortium
142
Katalin Susztak, Upenn
47
KPMP
28
Kyle Gaulton, UCSD
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
88
inconsistent ontology term
8
audit script error
month_released!
May, 2022
assay_slims!
DNA binding
assay_title!
DNase-seq
BIOSAMPLE
ASSAY
1626 results
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total RNA-seq
ATAC-seq
single cell RNA-seq
RNA microarray
WGBS
snATAC-seq
pCHi-C
Hi-C
small RNA-seq
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
adipose tissue
382
3
3
1
islet of Langerhans
286
50
6
7
4
3
1
1
4
kidney
49
75
64
6
1
1
1
liver
147
1
3
1
1
1
1
bone element
84
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