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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
43
ATAC-seq
27
snATAC-seq
12
DNase-seq
2
FAIRE-seq
Assay category
857
DNA binding
365
Transcription
84
DNA accessibility
21
DNA methylation
1
3D chromatin structure
Date released
27
February, 2021
May, 2022
14
September, 2018
10
November, 2018
9
August, 2017
8
October, 2017
7
August, 2020
5
September, 2017
3
September, 2020
1
March, 2019
Available data
454
bed narrowPeak
371
bam
330
bigWig
241
bigBed narrowPeak
208
bed bed3+
208
bed broadPeak
206
bigBed broadPeak
84
fastq
64
xls
14
tsv
12
bed bed3
7
bed bedgraph
3
txt
1
tar
Organism
84
Homo sapiens
Biosample type
60
primary cell
23
tissue
1
in vitro differentiated cells
Organ
43
pancreas
32
epithelium
4
connective tissue
4
liver
3
adipose tissue
3
brain
2
spleen
Project
47
AMP
37
HPAP
Genome assembly (visualization)
53
GRCh38
45
hg19
Lab
45
AMP-T2D consortium
37
Klaus Kaestner, Upenn
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
27
audit script error
month_released!
May, 2022
BIOSAMPLE
ASSAY
84 results
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ATAC-seq
snATAC-seq
DNase-seq
FAIRE-seq
primary cell
Langerhans cell
27
pancreatic alpha cell
13
pancreatic beta cell
10
pancreatic acinar cell
5
pancreatic ductal cell
4
+ See 1 more…
tissue
body of pancreas
4
2
islet of Langerhans
2
1
1
brain
2
liver
2
omental fat pad
1
1
+ See 5 more…
in vitro differentiated cells
adipocyte
1
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