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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
454
ATAC-seq
203
DNase-seq
62
snATAC-seq
4
FAIRE-seq
Assay category
1857
Transcription
1761
DNA binding
723
DNA accessibility
49
DNA methylation
34
3D chromatin structure
1
DNA sequencing
Date released
187
June, 2019
105
February, 2023
100
May, 2020
May, 2022
82
August, 2021
49
February, 2021
34
May, 2021
33
October, 2019
26
November, 2019
16
January, 2021
14
September, 2018
11
August, 2017
11
May, 2023
10
April, 2020
November, 2018
8
July, 2019
8
October, 2017
7
August, 2020
5
September, 2017
4
March, 2019
4
March, 2020
3
January, 2018
3
September, 2020
2
November, 2020
1
August, 2022
Available data
444
bed narrowPeak
361
bam
320
bigWig
231
bigBed narrowPeak
199
bed bed3+
199
bed broadPeak
197
bigBed broadPeak
74
fastq
64
xls
14
tsv
12
bed bed3
7
bed bedgraph
3
txt
1
tar
Organism
722
Homo sapiens
Biosample type
421
tissue
228
primary cell
43
in vitro differentiated cells
31
cell line
Organ
163
kidney
113
pancreas
84
epithelium
77
heart
58
vasculature
56
blood vessel
49
artery
44
limb
35
brain
34
musculature of body
33
connective tissue
32
eye
18
ureter
12
bone element
12
skeleton
10
lung
9
blood
9
bodily fluid
7
adipose tissue
6
liver
3
nerve
3
vein
1
pituitary gland
1
skin of body
1
spleen
Project
647
AMP
37
HPAP
29
T1D
10
LungMap
Genome assembly (visualization)
432
GRCh38
404
hg19
Lab
551
AMP-T2D consortium
81
Katalin Susztak, Upenn
37
Klaus Kaestner, Upenn
34
Kyle Gaulton, UCSD
10
Xin Sun, UCSD
5
Struan F.A. Grant, CHOP
2
Mark McCarthy, Oxford
1
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
46
inconsistent ontology term
28
audit script error
1
inconsistent replicate
month_released!
May, 2022
November, 2018
BIOSAMPLE
ASSAY
723 results
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Clear Filters
ATAC-seq
DNase-seq
snATAC-seq
FAIRE-seq
tissue
kidney
75
13
6
1
islet of Langerhans
50
1
7
1
coronary artery
36
2
heart
18
retina
15
3
+ See 59 more…
primary cell
Langerhans cell
27
CD4-positive, alpha-beta memory T cell
22
naive thymus-derived CD4-positive, alpha-beta T cell
22
monocyte
15
pancreatic alpha cell
13
+ See 58 more…
in vitro differentiated cells
neural progenitor cell
10
adipocyte
8
1
embryonic stem cell
6
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
chondrocyte
5
+ See 7 more…
cell line
EndoC_BH1
19
smooth muscle cell of the coronary artery
8
GM12878
1
HepG2
1
Panc1
1
+ See 1 more…
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