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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
446
ATAC-seq
212
DNase-seq
62
snATAC-seq
5
FAIRE-seq
Assay category
1858
Transcription
1816
DNA binding
725
DNA accessibility
56
DNA methylation
34
3D chromatin structure
1
DNA sequencing
Date released
187
June, 2019
105
February, 2023
100
May, 2020
May, 2022
82
August, 2021
49
February, 2021
34
May, 2021
33
October, 2019
26
November, 2019
16
January, 2021
14
September, 2018
11
August, 2017
11
May, 2023
10
April, 2020
10
November, 2018
8
July, 2019
October, 2017
7
August, 2020
5
September, 2017
4
March, 2019
4
March, 2020
3
January, 2018
3
September, 2020
2
November, 2020
1
August, 2022
Available data
448
bed narrowPeak
364
bam
322
bigWig
241
bigBed narrowPeak
208
bed bed3+
207
bed broadPeak
206
bigBed broadPeak
76
fastq
64
xls
14
tsv
12
bed bed3
7
bed bedgraph
3
txt
1
tar
Organism
724
Homo sapiens
Biosample type
423
tissue
228
primary cell
43
in vitro differentiated cells
31
cell line
Organ
163
kidney
111
pancreas
84
epithelium
77
heart
58
vasculature
56
blood vessel
49
artery
44
limb
36
brain
34
musculature of body
33
connective tissue
32
eye
18
ureter
12
bone element
12
skeleton
10
lung
9
blood
9
bodily fluid
9
liver
7
adipose tissue
3
nerve
3
vein
1
pituitary gland
1
skin of body
1
spleen
Project
649
AMP
37
HPAP
29
T1D
10
LungMap
Genome assembly (visualization)
433
GRCh38
407
hg19
Lab
554
AMP-T2D consortium
81
Katalin Susztak, Upenn
37
Klaus Kaestner, Upenn
34
Kyle Gaulton, UCSD
10
Xin Sun, UCSD
5
Struan F.A. Grant, CHOP
2
Mark McCarthy, Oxford
1
Bing Ren, UCSD
1
Maike Sander, UCSD
Audit category:
46
inconsistent ontology term
28
audit script error
1
inconsistent replicate
month_released!
May, 2022
October, 2017
BIOSAMPLE
ASSAY
725 results
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Clear Filters
ATAC-seq
DNase-seq
snATAC-seq
FAIRE-seq
tissue
kidney
75
13
6
1
islet of Langerhans
49
1
7
1
coronary artery
36
2
heart
18
retina
15
3
+ See 60 more…
primary cell
Langerhans cell
27
CD4-positive, alpha-beta memory T cell
22
naive thymus-derived CD4-positive, alpha-beta T cell
22
monocyte
15
pancreatic alpha cell
13
+ See 58 more…
in vitro differentiated cells
neural progenitor cell
10
adipocyte
8
1
embryonic stem cell
6
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
chondrocyte
5
+ See 7 more…
cell line
EndoC_BH1
19
smooth muscle cell of the coronary artery
8
GM12878
1
HepG2
1
Panc1
1
+ See 1 more…
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