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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
39
ChIP-seq
33
DNase-seq
6
Hi-C
6
total RNA-seq
5
RRBS
small RNA-seq
1
ATAC-seq
1
WGBS
1
pCHi-C
Assay category
39
DNA binding
34
DNA accessibility
6
3D chromatin structure
6
DNA methylation
6
Transcription
Target of assay
33
histone
33
histone modification
20
broad histone mark
13
narrow histone mark
6
control
Date released
43
June, 2019
26
August, 2017
8
July, 2019
7
May, 2019
5
March, 2020
2
February, 2020
May, 2022
1
January, 2018
Available data
66
bigWig
60
bed narrowPeak
55
bam
47
bigBed narrowPeak
46
bed broadPeak
33
bed bed3+
33
bigBed broadPeak
15
tagAlign
7
tsv
4
bed bedMethyl
4
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
Organism
92
Homo sapiens
Biosample type
79
tissue
13
primary cell
Organ
840
pancreas
748
liver
681
connective tissue
488
adipose tissue
444
epithelium
353
kidney
352
heart
282
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
92
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
92
AMP
Genome assembly (visualization)
70
hg19
51
GRCh38
Lab
92
AMP-T2D consortium
Audit category:
9
inconsistent ontology term
month_released!
May, 2022
assay_title!
small RNA-seq
BIOSAMPLE
ASSAY
92 results
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ChIP-seq
DNase-seq
Hi-C
total RNA-seq
RRBS
ATAC-seq
WGBS
pCHi-C
tissue
skeletal muscle tissue
22
1
4
1
muscle of leg
7
13
1
muscle of arm
17
gastrocnemius medialis
4
1
psoas muscle
2
2
1
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primary cell
skeletal muscle satellite cell
8
1
skeletal muscle cell
2
1
1
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