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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1011
total RNA-seq
907
ChIP-seq
222
ATAC-seq
178
DNase-seq
173
single cell RNA-seq
87
RNA microarray
27
WGBS
27
snATAC-seq
25
pCHi-C
16
Hi-C
16
small RNA-seq
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
222
DNA accessibility
Date released
79
February, 2023
64
August, 2021
May, 2022
20
November, 2019
16
October, 2019
11
May, 2023
8
February, 2021
8
October, 2017
6
July, 2019
4
March, 2019
2
August, 2017
2
January, 2018
2
March, 2020
Available data
170
bed narrowPeak
64
xls
46
bam
23
bigWig
11
fastq
5
bed bed3
3
bigBed narrowPeak
2
bed broadPeak
1
tsv
Organism
222
Homo sapiens
Biosample type
222
tissue
161
primary cell
42
in vitro differentiated cells
29
cell line
Organ
75
kidney
44
pancreas
39
heart
38
blood vessel
38
vasculature
37
artery
28
eye
12
bone element
12
epithelium
12
skeleton
8
limb
6
adipose tissue
6
connective tissue
4
brain
1
liver
1
musculature of body
1
nerve
1
pituitary gland
1
skin of body
1
spleen
Project
211
AMP
11
T1D
Genome assembly (visualization)
158
GRCh38
84
hg19
Lab
131
AMP-T2D consortium
75
Katalin Susztak, Upenn
11
Kyle Gaulton, UCSD
2
Mark McCarthy, Oxford
1
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
1
inconsistent ontology term
month_released!
May, 2022
BIOSAMPLE
ASSAY
222 results
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Clear Filters
ATAC-seq
tissue
kidney
75
islet of Langerhans
50
coronary artery
36
retina
15
pigmented layer of retina
12
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