Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
212
ChIP-seq
211
total RNA-seq
111
single cell RNA-seq
108
ATAC-seq
61
snATAC-seq
17
pCHi-C
10
MeRIP-seq
8
Hi-C
6
WGBS
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
2
Capture-C
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
108
DNA accessibility
Date released
May, 2022
66
August, 2021
11
February, 2023
11
May, 2023
7
August, 2020
5
May, 2021
4
March, 2019
3
September, 2020
1
October, 2017
Available data
68
bed narrowPeak
64
xls
21
bigWig
12
fastq
3
bed bedgraph
txt
2
bed broadPeak
1
bam
Organism
108
Homo sapiens
Biosample type
91
tissue
10
primary cell
7
in vitro differentiated cells
Organ
75
kidney
26
pancreas
10
epithelium
2
connective tissue
Project
87
AMP
11
T1D
10
HPAP
Genome assembly (visualization)
88
GRCh38
10
hg19
Lab
AMP-T2D consortium
75
Katalin Susztak, Upenn
16
Kyle Gaulton, UCSD
10
Klaus Kaestner, Upenn
2
Mark McCarthy, Oxford
2
Struan F.A. Grant, CHOP
1
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Stephen Parker, UMich
month_released!
May, 2022
lab.title!
AMP-T2D consortium
files.file_type!
txt
BIOSAMPLE
ASSAY
108 results
search-icon
table-tab-icon
Clear Filters
ATAC-seq
tissue
kidney
75
islet of Langerhans
16
primary cell
pancreatic alpha cell
7
pancreatic beta cell
3
in vitro differentiated cells
embryonic stem cell
5
adipocyte
1
osteoblast
1
Download