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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
151
total RNA-seq
119
single cell RNA-seq
95
ATAC-seq
58
ChIP-seq
43
snATAC-seq
10
MeRIP-seq
8
Hi-C
6
WGBS
5
STARR-seq
2
Capture-C
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
95
DNA accessibility
Date released
66
August, 2021
May, 2022
11
May, 2023
7
August, 2020
4
March, 2019
3
February, 2023
3
September, 2020
1
October, 2017
Available data
68
bed narrowPeak
64
xls
16
bigWig
12
fastq
3
bed bedgraph
3
txt
2
bed broadPeak
1
bam
Organism
95
Homo sapiens
Biosample type
80
tissue
10
primary cell
5
in vitro differentiated cells
Organ
75
kidney
15
pancreas
10
epithelium
2
connective tissue
Project
85
AMP
10
HPAP
Genome assembly (visualization)
88
GRCh38
8
hg19
Lab
AMP-T2D consortium
75
Katalin Susztak, Upenn
Kyle Gaulton, UCSD
10
Klaus Kaestner, Upenn
5
Struan F.A. Grant, CHOP
2
Mark McCarthy, Oxford
1
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
1
inconsistent ontology term
month_released!
May, 2022
lab.title!
AMP-T2D consortium
Kyle Gaulton, UCSD
BIOSAMPLE
ASSAY
95 results
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Clear Filters
ATAC-seq
tissue
kidney
75
islet of Langerhans
5
primary cell
pancreatic alpha cell
7
pancreatic beta cell
3
in vitro differentiated cells
Progenitor cell of Hypothalamus (neural progenitor cell)
1
adipocyte
1
embryonic stem cell
1
neuron cell of Hypothalamus (neuron)
1
osteoblast
1
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