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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
397
total RNA-seq
218
ChIP-seq
95
ATAC-seq
74
single cell RNA-seq
11
snATAC-seq
10
MeRIP-seq
10
WGBS
9
Hi-C
8
DNase-seq
2
Capture-C
2
FAIRE-seq
2
RRBS
2
small RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
pCHi-C
Assay category
95
DNA accessibility
Date released
May, 2022
20
November, 2019
16
May, 2021
14
September, 2018
11
February, 2023
7
August, 2020
5
October, 2017
5
September, 2017
4
March, 2019
4
March, 2020
3
August, 2017
3
October, 2019
3
September, 2020
Available data
47
bam
46
bed narrowPeak
41
bigWig
38
fastq
22
bigBed narrowPeak
2
bed broadPeak
2
tsv
Organism
95
Homo sapiens
Biosample type
44
tissue
32
primary cell
19
cell line
Organ
95
pancreas
75
kidney
64
epithelium
heart
46
blood vessel
46
vasculature
45
artery
28
eye
25
connective tissue
12
bone element
12
skeleton
8
limb
6
adipose tissue
4
brain
3
liver
1
blood
1
bodily fluid
1
musculature of body
1
nerve
1
pituitary gland
1
skin of body
1
spleen
Project
74
AMP
11
T1D
10
HPAP
Genome assembly (visualization)
59
GRCh38
53
hg19
Lab
69
AMP-T2D consortium
11
Kyle Gaulton, UCSD
10
Klaus Kaestner, Upenn
2
Mark McCarthy, Oxford
1
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
19
inconsistent ontology term
month_released!
May, 2022
organ_slims!
heart
BIOSAMPLE
ASSAY
95 results
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Clear Filters
ATAC-seq
tissue
islet of Langerhans
40
body of pancreas
4
primary cell
pancreatic alpha cell
13
pancreatic beta cell
10
pancreatic acinar cell
5
pancreatic ductal cell
4
cell line
EndoC_BH1
19
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