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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1871
ChIP-seq
1448
total RNA-seq
451
ATAC-seq
320
single cell RNA-seq
212
DNase-seq
57
pCHi-C
34
WGBS
34
snATAC-seq
30
Hi-C
21
RRBS
18
small RNA-seq
10
MeRIP-seq
5
FAIRE-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
RNA microarray
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
320
Transcription
1
DNA sequencing
Target of assay
3
control
Date released
99
August, 2021
49
April, 2018
48
July, 2018
47
September, 2023
40
September, 2020
May, 2022
13
February, 2021
9
April, 2020
3
August, 2018
3
July, 2019
3
June, 2018
3
May, 2023
1
December, 2019
1
February, 2023
1
November, 2018
1
September, 2018
Available data
204
tsv
134
fastq
106
bam
106
bigWig
19
zippedFastqFolder
txt
3
csv
1
vcf
Organism
321
Homo sapiens
Biosample type
166
tissue
154
primary cell
1
cell line
Organ
93
heart
80
pancreas
70
epithelium
51
kidney
9
lung
6
blood vessel
6
vasculature
4
connective tissue
3
brain
2
artery
2
liver
Project
213
AMP
52
HPAP
47
KPMP
9
LungMap
Genome assembly (visualization)
106
GRCh38
106
hg19
Lab
209
AMP-T2D consortium
52
Klaus Kaestner, Upenn
47
KPMP
9
Xin Sun, UCSD
3
Katalin Susztak, Upenn
1
Bing Ren, UCSD
Audit category:
9
inconsistent ontology term
audit script error
month_released!
May, 2022
audit.ERROR.category!
audit script error
files.file_type!
txt
BIOSAMPLE
ASSAY
321 results
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single cell RNA-seq
whole genome sequencing assay
tissue
kidney
51
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
+ See 13 more…
primary cell
Langerhans cell
52
pancreatic acinar cell
12
pancreatic alpha cell
12
pancreatic beta cell
12
pancreatic delta cell
11
+ See 14 more…
cell line
HepG2
1
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