Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1871
ChIP-seq
440
ATAC-seq
212
DNase-seq
186
total RNA-seq
124
single cell RNA-seq
85
RNA microarray
62
snATAC-seq
34
Hi-C
28
WGBS
26
pCHi-C
21
RRBS
10
MeRIP-seq
5
FAIRE-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
124
Transcription
Date released
47
September, 2023
40
September, 2020
May, 2022
13
February, 2021
9
April, 2020
8
August, 2021
3
May, 2023
1
December, 2019
1
February, 2023
1
November, 2018
1
September, 2018
Available data
tsv
128
fastq
100
bam
100
bigWig
19
zippedFastqFolder
13
txt
8
csv
Organism
124
Homo sapiens
Biosample type
70
tissue
54
primary cell
Organ
59
kidney
9
lung
1
heart
1
liver
Project
52
HPAP
47
KPMP
16
AMP
9
LungMap
Lab
52
Klaus Kaestner, Upenn
47
KPMP
11
Katalin Susztak, Upenn
9
Xin Sun, UCSD
5
AMP-T2D consortium
month_released!
May, 2022
files.file_type!
tsv
BIOSAMPLE
ASSAY
124 results
search-icon
table-tab-icon
Clear Filters
single cell RNA-seq
tissue
kidney
59
lung
9
heart
1
liver
1
primary cell
Langerhans cell
52
pancreatic cell
2
Download