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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
297
ATAC-seq
293
ChIP-seq
229
single cell RNA-seq
225
total RNA-seq
87
RNA microarray
62
snATAC-seq
56
pCHi-C
34
Hi-C
21
RRBS
16
WGBS
10
MeRIP-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
DNase-seq
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
229
Transcription
62
DNA accessibility
Date released
112
August, 2021
May, 2022
47
September, 2023
45
February, 2021
40
September, 2020
19
April, 2020
16
January, 2021
3
December, 2019
3
February, 2023
3
May, 2023
1
August, 2022
1
November, 2018
1
September, 2018
Available data
205
tsv
155
fastq
bam
100
bigWig
19
zippedFastqFolder
13
txt
8
csv
Organism
290
Homo sapiens
Biosample type
200
tissue
89
primary cell
2
in vitro differentiated cells
Organ
93
heart
70
kidney
19
lung
11
pancreas
8
blood
8
bodily fluid
6
blood vessel
6
vasculature
2
artery
1
liver
Project
128
AMP
79
HPAP
47
KPMP
19
LungMap
18
T1D
Lab
111
AMP-T2D consortium
79
Klaus Kaestner, Upenn
47
KPMP
19
Xin Sun, UCSD
18
Kyle Gaulton, UCSD
17
Katalin Susztak, Upenn
Audit category:
35
audit script error
2
inconsistent ontology term
month_released!
May, 2022
files.file_type!
bam
BIOSAMPLE
ASSAY
291 results
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single cell RNA-seq
snATAC-seq
tissue
kidney
64
6
lung
9
10
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
+ See 14 more…
primary cell
Langerhans cell
52
27
peripheral blood mononuclear cell
8
pancreatic cell
2
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
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