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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
297
ATAC-seq
253
ChIP-seq
225
total RNA-seq
220
single cell RNA-seq
87
RNA microarray
55
pCHi-C
52
snATAC-seq
34
Hi-C
21
RRBS
16
WGBS
10
MeRIP-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
DNase-seq
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
220
Transcription
Date released
106
August, 2021
47
September, 2023
40
September, 2020
May, 2022
18
February, 2021
3
December, 2019
3
May, 2023
1
February, 2023
1
November, 2018
1
September, 2018
Available data
205
tsv
128
fastq
bam
100
bigWig
19
zippedFastqFolder
13
txt
8
csv
Organism
220
Homo sapiens
Biosample type
164
tissue
54
primary cell
2
in vitro differentiated cells
Organ
93
heart
64
kidney
lung
6
blood vessel
6
vasculature
2
artery
1
liver
Project
121
AMP
52
HPAP
47
KPMP
Lab
110
AMP-T2D consortium
52
Klaus Kaestner, Upenn
47
KPMP
11
Katalin Susztak, Upenn
Audit category:
7
audit script error
2
inconsistent ontology term
month_released!
May, 2022
organ_slims!
lung
files.file_type!
bam
BIOSAMPLE
ASSAY
220 results
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single cell RNA-seq
tissue
kidney
64
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
+ See 11 more…
primary cell
Langerhans cell
52
pancreatic cell
2
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
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