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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
279
ChIP-seq
247
total RNA-seq
ATAC-seq
154
single cell RNA-seq
35
snATAC-seq
31
DNase-seq
17
pCHi-C
10
Hi-C
10
RRBS
6
WGBS
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
403
Transcription
279
DNA binding
67
DNA accessibility
17
DNA methylation
10
3D chromatin structure
Target of assay
237
histone
237
histone modification
122
broad histone mark
115
narrow histone mark
35
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
193
May, 2021
May, 2022
76
February, 2023
59
September, 2018
56
August, 2017
56
September, 2020
55
June, 2019
48
July, 2018
47
February, 2021
47
May, 2020
43
April, 2018
32
October, 2019
31
July, 2019
9
November, 2017
8
January, 2021
5
December, 2019
5
May, 2019
5
November, 2020
4
August, 2021
3
August, 2018
3
June, 2018
3
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
535
bigWig
525
bam
377
fastq
258
tsv
256
bed narrowPeak
100
tagAlign
87
bigBed narrowPeak
49
bed broadPeak
49
bigBed broadPeak
37
bed bed3+
19
zippedFastqFolder
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
tar
Organism
793
Homo sapiens
Biosample type
2449
tissue
793
primary cell
633
cell line
352
in vitro differentiated cells
10
stem cell
Organ
293
epithelium
234
pancreas
37
connective tissue
37
vasculature
36
kidney
31
blood vessel
22
vein
21
brain
14
musculature of body
13
heart
13
liver
8
blood
8
bodily fluid
5
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
408
AMP
204
T1D
180
HPAP
1
ITG
Genome assembly (visualization)
544
hg19
487
GRCh38
Lab
373
AMP-T2D consortium
239
Kyle Gaulton, UCSD
180
Klaus Kaestner, Upenn
1
ITG
Audit category:
42
inconsistent ontology term
31
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
month_released!
May, 2022
assay_title!
ATAC-seq
BIOSAMPLE
ASSAY
793 results
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ChIP-seq
total RNA-seq
single cell RNA-seq
snATAC-seq
DNase-seq
pCHi-C
Hi-C
RRBS
WGBS
small RNA-seq
DNAme array
FAIRE-seq
primary cell
monocyte
85
54
1
1
pancreatic alpha cell
13
52
12
1
6
Langerhans cell
52
27
pancreatic beta cell
13
21
12
1
exocrine cell
39
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