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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
279
ChIP-seq
total RNA-seq
161
ATAC-seq
154
single cell RNA-seq
35
snATAC-seq
31
DNase-seq
17
pCHi-C
10
Hi-C
10
RRBS
6
WGBS
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
279
DNA binding
228
DNA accessibility
156
Transcription
17
DNA methylation
10
3D chromatin structure
Target of assay
237
histone
237
histone modification
122
broad histone mark
115
narrow histone mark
35
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
151
May, 2021
May, 2022
100
May, 2020
59
August, 2017
55
June, 2019
48
July, 2018
47
February, 2021
47
September, 2018
43
April, 2018
43
September, 2020
32
October, 2019
18
July, 2019
12
February, 2023
9
November, 2017
8
January, 2021
7
August, 2020
5
May, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
June, 2018
3
October, 2022
2
November, 2020
1
March, 2020
1
March, 2023
1
November, 2018
Available data
461
bigWig
459
bam
295
bed narrowPeak
289
fastq
120
tsv
109
bigBed narrowPeak
100
tagAlign
49
bed broadPeak
49
bigBed broadPeak
35
bed bed3+
19
zippedFastqFolder
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
707
Homo sapiens
Biosample type
1660
tissue
707
primary cell
549
cell line
258
in vitro differentiated cells
10
stem cell
Organ
233
epithelium
185
pancreas
35
vasculature
30
kidney
29
blood vessel
29
connective tissue
22
vein
21
brain
13
musculature of body
9
heart
9
liver
8
blood
8
bodily fluid
5
eye
1
adipose tissue
1
bone element
1
bone marrow
Project
500
AMP
108
T1D
98
HPAP
1
ITG
Genome assembly (visualization)
476
hg19
386
GRCh38
Lab
467
AMP-T2D consortium
141
Kyle Gaulton, UCSD
98
Klaus Kaestner, Upenn
1
ITG
Audit category:
50
inconsistent ontology term
31
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
month_released!
May, 2022
assay_title!
total RNA-seq
BIOSAMPLE
ASSAY
707 results
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ChIP-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
DNase-seq
pCHi-C
Hi-C
RRBS
WGBS
small RNA-seq
DNAme array
FAIRE-seq
primary cell
monocyte
85
15
1
1
Langerhans cell
52
27
pancreatic alpha cell
13
13
12
1
6
CD8-positive, alpha-beta T cell
33
2
1
pancreatic beta cell
13
10
12
1
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