Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
961
total RNA-seq
840
ChIP-seq
147
ATAC-seq
110
DNase-seq
109
single cell RNA-seq
85
RNA microarray
27
WGBS
25
pCHi-C
21
snATAC-seq
15
Hi-C
15
small RNA-seq
10
RRBS
4
MeRIP-seq
3
FAIRE-seq
Assay category
1085
Transcription
840
DNA binding
281
DNA accessibility
37
DNA methylation
15
3D chromatin structure
Target of assay
573
histone modification
572
histone
299
narrow histone mark
273
broad histone mark
181
control
88
transcription factor
22
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
537
February, 2021
284
August, 2017
238
October, 2019
193
May, 2020
120
July, 2018
115
May, 2019
101
August, 2021
95
February, 2023
95
June, 2019
82
November, 2017
74
October, 2018
73
July, 2019
May, 2022
57
April, 2019
48
December, 2017
40
March, 2020
40
May, 2021
40
November, 2019
26
November, 2018
25
February, 2020
23
October, 2017
19
April, 2020
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
2
January, 2018
1
August, 2022
1
May, 2023
Available data
1785
bam
1621
bigWig
1064
tsv
753
bed narrowPeak
474
bigBed narrowPeak
353
fastq
238
tagAlign
145
bed broadPeak
136
bed bed3+
108
bigBed broadPeak
88
txt
24
bed bedMethyl
24
bigBed bedMethyl
10
bedpe bed3+
10
hic
5
bed bed3
1
bedpe
1
csv
1
tagAlign bed3+
Organism
2363
Homo sapiens
Biosample type
2372
tissue
918
primary cell
643
cell line
394
in vitro differentiated cells
10
stem cell
Organ
547
connective tissue
488
adipose tissue
481
pancreas
321
liver
kidney
273
heart
265
brain
158
bone element
133
blood vessel
133
vasculature
122
limb
80
musculature of body
73
artery
56
eye
43
nerve
25
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2322
AMP
31
T1D
19
LungMap
Genome assembly (visualization)
1654
GRCh38
1624
hg19
Lab
2313
AMP-T2D consortium
28
Kyle Gaulton, UCSD
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
91
inconsistent ontology term
27
inconsistent control
1
audit script error
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
month_released!
May, 2022
organ_slims!
kidney
BIOSAMPLE
ASSAY
2372 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
single cell RNA-seq
RNA microarray
WGBS
pCHi-C
snATAC-seq
Hi-C
small RNA-seq
RRBS
MeRIP-seq
FAIRE-seq
tissue
islet of Langerhans
292
71
50
1
4
7
3
1
4
1
adipose tissue
382
2
3
3
1
liver
147
145
2
1
3
1
1
1
1
bone element
84
heart left ventricle
3
35
2
3
18
4
1
1
1
+ See 161 more…
See all biosamples
Download