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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
91
ATAC-seq
67
single cell RNA-seq
56
total RNA-seq
26
snATAC-seq
4
MeRIP-seq
3
Hi-C
1
pCHi-C
Assay category
123
Transcription
117
DNA accessibility
3
3D chromatin structure
Target of assay
2
control
2
nucleotide modification
Date released
130
August, 2021
May, 2022
47
September, 2023
19
April, 2020
18
February, 2023
14
May, 2023
8
January, 2021
5
March, 2019
4
November, 2020
2
May, 2021
1
October, 2017
Available data
64
bed narrowPeak
64
xls
57
txt
2
bed broadPeak
2
fastq
2
hic
1
bam
1
bedpe
1
bedpe bed3+
1
bigWig
1
tsv
Organism
247
Homo sapiens
Biosample type
430
primary cell
248
tissue
54
in vitro differentiated cells
47
cell line
2
stem cell
Organ
189
kidney
39
pancreas
19
lung
1
thymus
Project
155
AMP
47
KPMP
27
T1D
19
LungMap
Genome assembly (visualization)
78
GRCh38
5
hg19
Lab
AMP-T2D consortium
142
Katalin Susztak, Upenn
47
KPMP
28
Kyle Gaulton, UCSD
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
month_released!
May, 2022
lab.title!
AMP-T2D consortium
BIOSAMPLE
ASSAY
248 results
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ATAC-seq
single cell RNA-seq
total RNA-seq
snATAC-seq
MeRIP-seq
Hi-C
pCHi-C
tissue
kidney
75
58
49
6
1
islet of Langerhans
16
6
6
4
2
lung
9
10
pancreas
1
4
thymus
1
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