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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
109
total RNA-seq
20
ChIP-seq
18
snATAC-seq
17
pCHi-C
16
ATAC-seq
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
Assay category
109
Transcription
34
DNA accessibility
20
DNA binding
Target of assay
134
histone
histone modification
74
broad histone mark
60
narrow histone mark
12
transcription factor
8
control
5
RNA binding protein
Date released
101
May, 2021
45
May, 2020
May, 2022
23
February, 2023
16
January, 2021
Available data
106
bigWig
96
bam
96
tsv
2
bed bed3+
Organism
185
Homo sapiens
Biosample type
125
primary cell
28
tissue
27
in vitro differentiated cells
5
cell line
Organ
27
pancreas
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
152
T1D
33
AMP
Genome assembly (visualization)
106
hg19
96
GRCh38
Lab
2414
AMP-T2D consortium
190
Klaus Kaestner, Upenn
185
Kyle Gaulton, UCSD
142
Katalin Susztak, Upenn
47
KPMP
35
Bing Ren, UCSD
19
Xin Sun, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
7
Struan F.A. Grant, CHOP
5
Patrick T. Ellinor, Broad
4
Anna Gloyn, Oxford
2
Mark McCarthy, Oxford
1
ITG
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
5
inconsistent ontology term
month_released!
May, 2022
files.file_type!
bigBed narrowPeak
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
185 results
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total RNA-seq
ChIP-seq
snATAC-seq
pCHi-C
ATAC-seq
CRISPR genome editing followed by DNA sequencing
HiChIP
primary cell
monocyte
53
1
CD8-positive, alpha-beta T cell
4
3
1
peripheral blood mononuclear cell
8
B cell
2
1
naive B cel
2
1
+ See 31 more…
tissue
islet of Langerhans
5
6
11
pancreas
1
4
thymus
1
in vitro differentiated cells
embryonic stem cell
5
17
5
cell line
EndoC_BH1
3
2
See all biosamples
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