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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
25
ChIP-seq
7
total RNA-seq
6
Hi-C
5
RRBS
2
small RNA-seq
1
ATAC-seq
1
WGBS
1
pCHi-C
Assay category
25
DNA binding
9
Transcription
6
3D chromatin structure
6
DNA methylation
1
DNA accessibility
Target of assay
19
histone
19
histone modification
12
broad histone mark
7
narrow histone mark
6
control
Date released
26
August, 2017
10
July, 2019
5
March, 2020
3
February, 2020
2
June, 2019
May, 2022
1
January, 2018
1
May, 2019
Available data
68
bigWig
60
bed narrowPeak
57
bam
bigBed narrowPeak
46
bed broadPeak
33
bed bed3+
33
bigBed broadPeak
15
tagAlign
10
tsv
4
bed bedMethyl
4
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
Organism
48
Homo sapiens
Biosample type
43
tissue
5
primary cell
Organ
751
pancreas
656
connective tissue
481
adipose tissue
393
liver
368
epithelium
299
heart
250
kidney
159
bone element
159
brain
153
vasculature
151
blood vessel
116
artery
55
eye
47
musculature of body
38
limb
37
embryo
20
lung
17
nerve
16
skeleton
15
blood
15
bodily fluid
12
spleen
9
vein
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
48
AMP
Genome assembly (visualization)
25
hg19
7
GRCh38
Lab
48
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
month_released!
May, 2022
files.file_type!
bigBed narrowPeak
BIOSAMPLE
ASSAY
48 results
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ChIP-seq
total RNA-seq
Hi-C
RRBS
small RNA-seq
ATAC-seq
WGBS
pCHi-C
tissue
skeletal muscle tissue
22
1
4
1
1
gastrocnemius medialis
1
4
psoas muscle
2
2
1
muscle of leg
1
1
C1 segment of cervical spinal cord
1
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primary cell
skeletal muscle satellite cell
1
1
1
skeletal muscle cell
1
1
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