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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
53
total RNA-seq
23
Hi-C
13
single cell RNA-seq
3
ATAC-seq
1
MPRA
Assay category
66
Transcription
23
3D chromatin structure
3
DNA accessibility
Date released
89
February, 2021
59
August, 2021
10
March, 2020
7
February, 2023
May, 2022
4
October, 2019
4
October, 2022
2
November, 2019
1
March, 2019
1
March, 2023
Available data
3368
bam
3109
bigWig
1739
bed narrowPeak
1600
tsv
1334
fastq
1042
bigBed narrowPeak
398
tagAlign
322
bed broadPeak
285
bigBed broadPeak
272
bed bed3+
154
txt
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
23
hic
19
zippedFastqFolder
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
176
Homo sapiens
Biosample type
161
tissue
7
in vitro differentiated cells
6
primary cell
3
cell line
Organ
88
bone element
63
kidney
7
pancreas
6
epithelium
4
skeleton
3
blood vessel
3
heart
3
vasculature
2
liver
2
musculature of body
2
vein
Project
173
AMP
3
HPAP
1
ITG
Genome assembly (visualization)
25
hg19
1
GRCh38
Lab
110
AMP-T2D consortium
58
Katalin Susztak, Upenn
3
Klaus Kaestner, Upenn
3
Struan F.A. Grant, CHOP
2
Bing Ren, UCSD
1
ITG
Audit category:
90
inconsistent ontology term
9
audit script error
month_released!
May, 2022
BIOSAMPLE
ASSAY
177 results
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RNA microarray
total RNA-seq
Hi-C
single cell RNA-seq
ATAC-seq
MPRA
tissue
bone element
84
kidney
49
1
13
islet of Langerhans
2
psoas muscle
2
acetabular part of hip bone
1
+ See 9 more…
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
Progenitor cell of Hypothalamus (neural progenitor cell)
1
cardiac precursors (cardiac muscle cell)
1
embryonic stem cell
1
lymphocyte of B lineage (iPSC)
1
+ See 1 more…
primary cell
endothelial cell of umbilical vein
2
chondrocytes
1
pancreatic acinar cell
1
pancreatic alpha cell
1
pancreatic beta cell
1
cell line
EndoC_BH1
1
HepG2
1
MIN6
1
See all biosamples
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