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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
260
total RNA-seq
119
single cell RNA-seq
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
383
Transcription
172
DNA accessibility
172
DNA binding
8
3D chromatin structure
6
DNA methylation
1
DNA sequencing
Date released
81
February, 2023
67
August, 2021
59
May, 2021
May, 2022
56
September, 2020
47
September, 2023
45
May, 2020
12
February, 2021
9
April, 2020
4
March, 2023
3
May, 2023
Available data
126
fastq
106
tsv
98
bigWig
96
bam
57
txt
19
zippedFastqFolder
2
bed bed3+
Organism
379
Homo sapiens
Biosample type
242
primary cell
123
tissue
11
cell line
5
in vitro differentiated cells
2
stem cell
Organ
107
kidney
60
pancreas
53
epithelium
9
liver
9
lung
Project
144
HPAP
101
T1D
78
AMP
47
KPMP
9
LungMap
4
community
Genome assembly (visualization)
98
hg19
96
GRCh38
Lab
AMP-T2D consortium
144
Klaus Kaestner, Upenn
109
Kyle Gaulton, UCSD
60
Katalin Susztak, Upenn
47
KPMP
10
Bing Ren, UCSD
9
Xin Sun, UCSD
4
Anna Gloyn, Oxford
Audit category:
4
inconsistent ontology term
month_released!
May, 2022
lab.title!
AMP-T2D consortium
BIOSAMPLE
ASSAY
383 results
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total RNA-seq
single cell RNA-seq
CRISPR RNA-seq
CRISPRi RNA-seq
shRNA RNA-seq
siRNA RNA-seq
primary cell
monocyte
53
Langerhans cell
52
pancreatic alpha cell
42
exocrine cell
39
pancreatic beta cell
11
+ See 24 more…
tissue
kidney
49
58
lung
9
islet of Langerhans
6
pancreas
1
cell line
HepG2
9
EndoC-BH1
1
1
in vitro differentiated cells
embryonic stem cell
5
stem cell
SB Ad3.1
1
1
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