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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
222
ATAC-seq
178
DNase-seq
27
snATAC-seq
4
FAIRE-seq
Assay category
1200
Transcription
907
DNA binding
431
DNA accessibility
38
DNA methylation
16
3D chromatin structure
Date released
163
June, 2019
81
February, 2023
70
August, 2021
May, 2022
20
November, 2019
20
October, 2019
11
May, 2023
10
April, 2020
10
November, 2018
8
February, 2021
8
January, 2021
8
July, 2019
8
October, 2017
5
August, 2017
4
March, 2019
2
January, 2018
2
March, 2020
1
August, 2022
Available data
351
bed narrowPeak
227
bam
204
bigWig
184
bigBed narrowPeak
178
bed broadPeak
176
bed bed3+
176
bigBed broadPeak
64
xls
23
fastq
5
bed bed3
1
tsv
Organism
430
Homo sapiens
Biosample type
431
tissue
228
primary cell
38
in vitro differentiated cells
31
cell line
Organ
150
kidney
66
heart
64
pancreas
44
limb
43
blood vessel
43
vasculature
41
artery
33
musculature of body
32
brain
31
eye
18
ureter
12
bone element
12
epithelium
12
skeleton
10
lung
8
adipose tissue
8
connective tissue
5
liver
3
nerve
2
spleen
1
pituitary gland
1
skin of body
Project
400
AMP
21
T1D
10
LungMap
Genome assembly (visualization)
335
GRCh38
249
hg19
Lab
314
AMP-T2D consortium
81
Katalin Susztak, Upenn
21
Kyle Gaulton, UCSD
10
Xin Sun, UCSD
2
Mark McCarthy, Oxford
1
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
2
inconsistent ontology term
1
audit script error
month_released!
May, 2022
lab.title!
Struan F.A. Grant, CHOP
BIOSAMPLE
ASSAY
431 results
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ATAC-seq
DNase-seq
snATAC-seq
FAIRE-seq
tissue
kidney
75
13
6
1
islet of Langerhans
50
1
7
1
coronary artery
36
2
heart
18
retina
15
3
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