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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
185
ChIP-seq
129
ATAC-seq
127
total RNA-seq
30
DNase-seq
26
single cell RNA-seq
17
pCHi-C
10
Hi-C
9
RRBS
8
snATAC-seq
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
185
DNA binding
168
DNA accessibility
155
Transcription
10
3D chromatin structure
10
DNA methylation
Target of assay
164
histone
164
histone modification
89
broad histone mark
75
narrow histone mark
19
control
5
RNA binding protein
5
transcription factor
Date released
206
May, 2021
147
May, 2020
May, 2022
55
June, 2019
34
October, 2019
31
July, 2019
18
September, 2020
12
February, 2023
8
January, 2021
6
November, 2020
5
April, 2018
5
December, 2019
5
May, 2019
4
August, 2021
3
February, 2021
3
October, 2022
1
August, 2017
1
March, 2020
1
March, 2023
Available data
613
bigWig
609
bam
fastq
295
bed narrowPeak
270
tsv
109
bigBed narrowPeak
100
tagAlign
49
bed broadPeak
49
bigBed broadPeak
37
bed bed3+
19
zippedFastqFolder
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
545
Homo sapiens
Biosample type
2358
tissue
545
primary cell
246
in vitro differentiated cells
235
cell line
6
stem cell
Organ
88
epithelium
36
connective tissue
36
kidney
31
vasculature
28
blood vessel
22
vein
14
liver
14
musculature of body
13
heart
12
brain
8
blood
8
bodily fluid
8
pancreas
5
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
319
AMP
204
T1D
21
HPAP
1
ITG
Genome assembly (visualization)
402
hg19
307
GRCh38
Lab
284
AMP-T2D consortium
239
Kyle Gaulton, UCSD
21
Klaus Kaestner, Upenn
1
ITG
Audit category:
47
inconsistent ontology term
4
audit script error
month_released!
May, 2022
lab.title!
Struan F.A. Grant, CHOP
files.file_type!
fastq
BIOSAMPLE
ASSAY
545 results
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Clear Filters
ChIP-seq
ATAC-seq
total RNA-seq
DNase-seq
single cell RNA-seq
pCHi-C
Hi-C
RRBS
snATAC-seq
small RNA-seq
DNAme array
FAIRE-seq
primary cell
monocyte
85
15
54
1
1
CD8-positive, alpha-beta T cell
33
2
4
1
naive thymus-derived CD4-positive, alpha-beta T cell
2
22
1
1
CD4-positive, alpha-beta memory T cell
22
endothelial cell of umbilical vein
17
2
2
1
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