Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
260
total RNA-seq
212
ChIP-seq
119
single cell RNA-seq
106
ATAC-seq
61
snATAC-seq
17
pCHi-C
10
MeRIP-seq
8
Hi-C
6
WGBS
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
260
Transcription
Date released
81
February, 2023
59
August, 2021
59
May, 2021
45
May, 2020
May, 2022
16
September, 2020
Available data
106
tsv
98
bigWig
96
bam
92
fastq
49
txt
2
bed bed3+
Organism
260
Homo sapiens
Biosample type
190
primary cell
56
tissue
9
cell line
5
in vitro differentiated cells
Organ
60
pancreas
53
epithelium
49
kidney
9
liver
Project
101
T1D
92
HPAP
67
AMP
Genome assembly (visualization)
98
hg19
96
GRCh38
Lab
AMP-T2D consortium
109
Kyle Gaulton, UCSD
92
Klaus Kaestner, Upenn
49
Katalin Susztak, Upenn
10
Bing Ren, UCSD
Audit category:
4
inconsistent ontology term
month_released!
May, 2022
lab.title!
Struan F.A. Grant, CHOP
AMP-T2D consortium
BIOSAMPLE
ASSAY
260 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
primary cell
monocyte
53
pancreatic alpha cell
42
exocrine cell
39
pancreatic beta cell
11
CD8-positive, alpha-beta T cell
4
+ See 23 more…
tissue
kidney
49
islet of Langerhans
6
pancreas
1
cell line
HepG2
9
in vitro differentiated cells
embryonic stem cell
5
See all biosamples
Download