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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
92
total RNA-seq
52
single cell RNA-seq
27
snATAC-seq
11
ATAC-seq
6
WGBS
3
Hi-C
Assay category
144
Transcription
38
DNA accessibility
6
DNA methylation
3
3D chromatin structure
Date released
May, 2022
76
February, 2023
59
September, 2020
45
February, 2021
7
August, 2020
3
October, 2022
1
October, 2017
Available data
170
fastq
19
zippedFastqFolder
11
bigWig
6
tsv
3
bedpe bed3+
3
cool
3
hic
1
bed broadPeak
Organism
191
Homo sapiens
Biosample type
190
primary cell
1
tissue
Organ
73
pancreas
72
epithelium
Project
190
HPAP
1
AMP
Genome assembly (visualization)
11
GRCh38
4
hg19
Lab
3910
AMP-T2D consortium
319
Kyle Gaulton, UCSD
190
Klaus Kaestner, Upenn
142
Katalin Susztak, Upenn
47
KPMP
38
Bing Ren, UCSD
19
Xin Sun, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
7
Struan F.A. Grant, CHOP
4
Anna Gloyn, Oxford
2
Mark McCarthy, Oxford
1
ITG
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
30
audit script error
month_released!
May, 2022
BIOSAMPLE
ASSAY
191 results
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total RNA-seq
single cell RNA-seq
snATAC-seq
ATAC-seq
WGBS
Hi-C
primary cell
Langerhans cell
52
27
pancreatic alpha cell
42
7
6
1
exocrine cell
39
pancreatic beta cell
11
3
1
pancreatic acinar cell
1
tissue
islet of Langerhans
1
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