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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
92
total RNA-seq
52
single cell RNA-seq
27
snATAC-seq
10
ATAC-seq
6
WGBS
3
Hi-C
Assay category
144
Transcription
37
DNA accessibility
6
DNA methylation
3
3D chromatin structure
Date released
May, 2022
76
February, 2023
59
September, 2020
45
February, 2021
7
August, 2020
3
October, 2022
Available data
169
fastq
19
zippedFastqFolder
10
bigWig
6
tsv
3
bedpe bed3+
3
cool
3
hic
Organism
190
Homo sapiens
Biosample type
190
primary cell
Organ
72
epithelium
72
pancreas
Project
190
HPAP
Genome assembly (visualization)
10
GRCh38
3
hg19
Lab
3910
AMP-T2D consortium
319
Kyle Gaulton, UCSD
190
Klaus Kaestner, Upenn
142
Katalin Susztak, Upenn
47
KPMP
40
Patrick T. Ellinor, Broad
38
Bing Ren, UCSD
19
Xin Sun, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
7
Struan F.A. Grant, CHOP
4
Anna Gloyn, Oxford
2
Mark McCarthy, Oxford
1
ITG
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
30
audit script error
month_released!
May, 2022
BIOSAMPLE
ASSAY
190 results
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total RNA-seq
single cell RNA-seq
snATAC-seq
ATAC-seq
WGBS
Hi-C
primary cell
Langerhans cell
52
27
pancreatic alpha cell
42
7
6
1
exocrine cell
39
pancreatic beta cell
11
3
1
pancreatic acinar cell
1
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