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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
53
total RNA-seq
13
single cell RNA-seq
3
ATAC-seq
1
MPRA
Assay category
66
Transcription
3
DNA accessibility
Date released
89
February, 2021
57
August, 2021
7
February, 2023
May, 2022
1
October, 2022
Available data
3118
bam
2942
bigWig
1590
bed narrowPeak
1584
tsv
1334
fastq
972
bigBed narrowPeak
349
tagAlign
313
bed broadPeak
276
bigBed broadPeak
264
bed bed3+
154
txt
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
20
bedpe bed3+
19
hic
19
zippedFastqFolder
12
bed bed3
8
csv
7
bed bedgraph
4
hdf5
3
cool
3
tar
2
ibed
1
bedpe
1
vcf
Organism
153
Homo sapiens
Biosample type
150
tissue
3
in vitro differentiated cells
1
cell line
Organ
88
bone element
62
kidney
4
skeleton
Project
154
AMP
Genome assembly (visualization)
3
hg19
Lab
94
AMP-T2D consortium
57
Katalin Susztak, Upenn
3
Struan F.A. Grant, CHOP
Audit category:
85
inconsistent ontology term
5
audit script error
month_released!
May, 2022
October, 2019
month_released!!
May, 2022
BIOSAMPLE
ASSAY
154 results
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RNA microarray
total RNA-seq
single cell RNA-seq
ATAC-seq
MPRA
tissue
bone element
84
kidney
49
13
acetabular part of hip bone
1
ilium
1
ischium
1
+ See 1 more…
in vitro differentiated cells
Progenitor cell of Hypothalamus (neural progenitor cell)
1
embryonic stem cell
1
neuron cell of Hypothalamus (neuron)
1
cell line
MIN6
1
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