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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
805
total RNA-seq
725
ChIP-seq
146
ATAC-seq
114
single cell RNA-seq
106
DNase-seq
85
RNA microarray
24
pCHi-C
23
WGBS
21
snATAC-seq
14
Hi-C
12
small RNA-seq
9
RRBS
4
MeRIP-seq
3
FAIRE-seq
Assay category
931
Transcription
725
DNA binding
276
DNA accessibility
32
DNA methylation
14
3D chromatin structure
Target of assay
538
histone
538
histone modification
270
narrow histone mark
268
broad histone mark
135
control
54
transcription factor
25
RNA binding protein
3
other context
3
other post-translational modification
2
nucleotide modification
Date released
536
February, 2021
232
October, 2019
230
August, 2017
120
July, 2018
115
May, 2019
101
August, 2021
95
February, 2023
95
June, 2019
82
November, 2017
74
October, 2018
65
July, 2019
57
April, 2019
40
May, 2021
40
May, 2024
40
November, 2019
37
March, 2020
May, 2022
24
February, 2020
23
October, 2017
19
April, 2020
19
November, 2018
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
2
January, 2018
1
August, 2022
1
May, 2023
Available data
1497
bam
1416
bigWig
910
tsv
700
bed narrowPeak
425
bigBed narrowPeak
270
fastq
168
tagAlign
142
bed broadPeak
130
bed bed3+
105
bigBed broadPeak
88
txt
23
bed bedMethyl
23
bigBed bedMethyl
9
bedpe bed3+
9
hic
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
2082
Homo sapiens
Biosample type
2091
tissue
904
primary cell
379
in vitro differentiated cells
242
cell line
10
stem cell
Organ
547
connective tissue
488
adipose tissue
481
pancreas
liver
313
heart
kidney
265
brain
158
bone element
133
blood vessel
133
vasculature
122
limb
80
musculature of body
73
artery
56
eye
43
nerve
25
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2041
AMP
31
T1D
19
LungMap
Genome assembly (visualization)
1456
GRCh38
1376
hg19
Lab
1992
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
28
Kyle Gaulton, UCSD
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
91
inconsistent ontology term
1
audit script error
Audit category:
26
missing controlled_by
Audit category:
5
inconsistent control read length
1
inconsistent assembly
month_released!
May, 2022
organ_slims!
liver
kidney
BIOSAMPLE
ASSAY
2091 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RNA microarray
pCHi-C
WGBS
snATAC-seq
Hi-C
small RNA-seq
RRBS
MeRIP-seq
FAIRE-seq
tissue
islet of Langerhans
286
71
50
6
1
4
7
3
1
4
1
adipose tissue
382
2
3
1
3
bone element
84
heart left ventricle
3
35
2
18
3
1
4
1
1
left cardiac atrium
40
18
1
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