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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
102
total RNA-seq
52
single cell RNA-seq
27
snATAC-seq
18
ChIP-seq
11
ATAC-seq
6
Hi-C
6
WGBS
5
STARR-seq
1
whole genome sequencing assay
Assay category
154
Transcription
38
DNA accessibility
18
DNA binding
6
3D chromatin structure
6
DNA methylation
1
DNA sequencing
Target of assay
11
transcription factor
4
control
3
histone
3
histone modification
2
narrow histone mark
1
RNA binding protein
1
broad histone mark
Date released
May, 2022
76
February, 2023
59
September, 2020
45
February, 2021
36
August, 2021
7
August, 2020
3
October, 2022
2
March, 2019
Available data
169
fastq
24
bigWig
19
zippedFastqFolder
16
tsv
14
bed narrowPeak
5
bedpe bed3+
5
hic
3
cool
1
bedpe
1
vcf
Organism
228
Homo sapiens
Biosample type
190
primary cell
34
cell line
4
tissue
Organ
76
pancreas
72
epithelium
31
liver
2
kidney
Project
190
HPAP
38
AMP
Genome assembly (visualization)
20
hg19
11
GRCh38
Lab
3905
AMP-T2D consortium
319
Kyle Gaulton, UCSD
190
Klaus Kaestner, Upenn
142
Katalin Susztak, Upenn
47
KPMP
40
Patrick T. Ellinor, Broad
38
Bing Ren, UCSD
19
Xin Sun, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
7
Struan F.A. Grant, CHOP
4
Anna Gloyn, Oxford
2
Mark McCarthy, Oxford
1
ITG
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
30
audit script error
1
inconsistent ontology term
month_released!
May, 2022
organ_slims!
ovary
BIOSAMPLE
ASSAY
228 results
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total RNA-seq
single cell RNA-seq
snATAC-seq
ChIP-seq
ATAC-seq
Hi-C
WGBS
STARR-seq
whole genome sequencing assay
primary cell
Langerhans cell
52
27
pancreatic alpha cell
42
7
1
6
exocrine cell
39
pancreatic beta cell
11
3
1
pancreatic acinar cell
1
cell line
HepG2
9
18
1
2
1
HEK293T
2
Synthesized DNA
1
tissue
islet of Langerhans
1
1
2
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