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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
50
total RNA-seq
18
snATAC-seq
11
ATAC-seq
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
Assay category
50
Transcription
29
DNA accessibility
Date released
May, 2021
45
May, 2020
May, 2022
23
February, 2023
16
January, 2021
Available data
45
bam
45
bigWig
45
tsv
Organism
84
Homo sapiens
Biosample type
53
primary cell
26
tissue
5
cell line
Organ
26
pancreas
8
blood
8
bodily fluid
Project
84
T1D
Genome assembly (visualization)
45
GRCh38
45
hg19
Lab
3741
AMP-T2D consortium
190
Klaus Kaestner, Upenn
142
Katalin Susztak, Upenn
84
Kyle Gaulton, UCSD
47
KPMP
40
Patrick T. Ellinor, Broad
38
Bing Ren, UCSD
19
Xin Sun, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
7
Struan F.A. Grant, CHOP
4
Anna Gloyn, Oxford
2
Mark McCarthy, Oxford
1
ITG
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
4
inconsistent ontology term
month_released!
May, 2022
May, 2021
organ_slims!
ovary
BIOSAMPLE
ASSAY
84 results
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total RNA-seq
snATAC-seq
ATAC-seq
CRISPR genome editing followed by DNA sequencing
HiChIP
primary cell
peripheral blood mononuclear cell
8
B cell
2
CD8-positive, alpha-beta T cell
2
T follicular helper cell
2
T-helper 1 cell
2
+ See 21 more…
tissue
islet of Langerhans
5
6
11
pancreas
4
cell line
EndoC_BH1
3
2
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