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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
429
ChIP-seq
159
total RNA-seq
5
DNase-seq
3
ATAC-seq
3
Hi-C
3
small RNA-seq
2
RRBS
1
pCHi-C
Assay category
429
DNA binding
162
Transcription
8
DNA accessibility
3
3D chromatin structure
2
DNA methylation
Target of assay
329
transcription factor
83
histone modification
82
histone
78
recombinant protein
55
RNA binding protein
52
narrow histone mark
30
broad histone mark
23
chromatin remodeller
14
control
2
other context
2
other post-translational modification
Date released
266
November, 2017
170
May, 2020
50
December, 2017
49
November, 2018
20
August, 2017
May, 2022
18
August, 2021
9
July, 2019
7
October, 2019
5
December, 2019
5
January, 2019
2
February, 2021
2
June, 2019
2
March, 2020
Available data
597
bigWig
585
bam
417
bed narrowPeak
390
fastq
354
bigBed narrowPeak
162
tsv
63
bed broadPeak
63
bigBed broadPeak
42
tagAlign
13
bed bed3+
3
tar
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
2
hic
1
bed bed3
1
hdf5
Organism
605
Homo sapiens
Biosample type
330
cell line
248
tissue
14
in vitro differentiated cells
13
primary cell
Organ
640
pancreas
605
liver
589
connective tissue
426
adipose tissue
311
epithelium
188
heart
165
vasculature
164
brain
159
blood vessel
129
kidney
96
limb
93
artery
72
musculature of body
70
bone element
55
blood
55
bodily fluid
34
eye
31
nerve
29
embryo
18
ureter
17
vein
14
spleen
12
skeleton
2
pericardium
1
pituitary gland
Project
605
AMP
Genome assembly (visualization)
605
hg19
531
GRCh38
Lab
590
AMP-T2D consortium
15
Bing Ren, UCSD
Audit category:
27
inconsistent control
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
12
missing controlled_by
Audit category:
27
inconsistent control read length
8
inconsistent control run_type
month_released!
May, 2022
organ_slims!
ovary
BIOSAMPLE
ASSAY
605 results
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ChIP-seq
total RNA-seq
DNase-seq
ATAC-seq
Hi-C
small RNA-seq
RRBS
pCHi-C
cell line
HepG2
322
5
1
1
1
tissue
liver
83
147
2
1
1
1
right lobe of liver
7
2
1
1
2
in vitro differentiated cells
hepatocyte
14
primary cell
hepatocyte
3
5
1
1
Liver fetal (hepatocyte)
1
endothelial cell of hepatic sinusoid
1
hepatic stellate cell
1
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