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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
56
total RNA-seq
45
ATAC-seq
33
ChIP-seq
22
DNase-seq
2
single cell RNA-seq
Assay category
67
DNA accessibility
58
Transcription
33
DNA binding
Target of assay
20
histone
20
histone modification
14
broad histone mark
9
control
6
narrow histone mark
5
transcription factor
RNA binding protein
Date released
66
February, 2021
35
February, 2023
26
October, 2019
20
June, 2019
4
May, 2019
3
July, 2019
2
August, 2021
2
February, 2020
Available data
119
bam
102
bigWig
91
bed narrowPeak
58
tsv
42
bigBed narrowPeak
22
bed bed3+
22
bed broadPeak
22
bigBed broadPeak
6
tagAlign
Organism
158
Homo sapiens
Biosample type
90
tissue
66
cell line
2
primary cell
Organ
833
pancreas
693
liver
674
connective tissue
486
adipose tissue
436
epithelium
382
heart
351
kidney
283
brain
231
vasculature
226
blood vessel
159
bone element
140
artery
122
limb
94
musculature of body
60
eye
59
blood
59
bodily fluid
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
158
AMP
Genome assembly (visualization)
145
GRCh38
110
hg19
Lab
158
AMP-T2D consortium
month_released!
May, 2022
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
158 results
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total RNA-seq
ATAC-seq
ChIP-seq
DNase-seq
single cell RNA-seq
tissue
coronary artery
1
36
4
2
tibial artery
1
1
23
2
renal pelvis
10
left renal pelvis
4
right renal pelvis
4
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cell line
smooth muscle cell of the coronary artery
52
8
6
primary cell
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
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