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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
33
DNase-seq
26
ChIP-seq
6
Hi-C
6
total RNA-seq
5
RRBS
2
small RNA-seq
1
ATAC-seq
1
WGBS
pCHi-C
Assay category
34
DNA accessibility
26
DNA binding
8
Transcription
6
3D chromatin structure
6
DNA methylation
Target of assay
33
histone
33
histone modification
20
broad histone mark
narrow histone mark
6
control
Date released
39
June, 2019
19
August, 2017
10
July, 2019
5
May, 2019
4
March, 2020
2
February, 2020
May, 2022
1
January, 2018
Available data
57
bigWig
51
bam
49
bed narrowPeak
41
bed broadPeak
41
bigBed narrowPeak
33
bed bed3+
33
bigBed broadPeak
10
tagAlign
8
tsv
4
bed bedMethyl
4
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
Organism
80
Homo sapiens
Biosample type
70
tissue
10
primary cell
Organ
768
pancreas
688
liver
646
connective tissue
477
adipose tissue
395
epithelium
350
heart
337
kidney
209
vasculature
204
blood vessel
167
brain
158
bone element
135
artery
107
limb
80
musculature of body
68
blood
68
bodily fluid
54
eye
35
nerve
29
embryo
22
spleen
19
lung
18
ureter
16
skeleton
16
vein
2
pericardium
1
pituitary gland
1
skin of body
1
spinal cord
Project
80
AMP
Genome assembly (visualization)
61
hg19
48
GRCh38
Lab
80
AMP-T2D consortium
Audit category:
6
inconsistent ontology term
month_released!
May, 2022
assay_title!
pCHi-C
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
80 results
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DNase-seq
ChIP-seq
Hi-C
total RNA-seq
RRBS
small RNA-seq
ATAC-seq
WGBS
tissue
skeletal muscle tissue
15
1
4
1
1
muscle of leg
13
5
1
muscle of arm
17
gastrocnemius medialis
4
1
psoas muscle
2
2
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primary cell
skeletal muscle satellite cell
5
1
1
skeletal muscle cell
1
1
1
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