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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
33
DNase-seq
4
total RNA-seq
3
ChIP-seq
2
small RNA-seq
1
WGBS
Assay category
33
DNA accessibility
6
Transcription
3
DNA binding
1
DNA methylation
Target of assay
14
histone
histone modification
8
broad histone mark
6
narrow histone mark
3
control
Date released
35
June, 2019
5
July, 2019
2
March, 2020
1
May, 2019
Available data
43
bam
41
bigWig
33
bed bed3+
33
bed broadPeak
33
bed narrowPeak
33
bigBed broadPeak
33
bigBed narrowPeak
9
tsv
4
bed bedMethyl
4
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
2
tagAlign
Organism
43
Homo sapiens
Biosample type
38
tissue
5
primary cell
Organ
601
liver
559
connective tissue
528
pancreas
441
adipose tissue
224
epithelium
150
heart
114
kidney
114
vasculature
110
blood vessel
82
artery
77
brain
66
bone element
66
limb
59
blood
59
bodily fluid
43
musculature of body
24
embryo
18
nerve
18
spleen
18
ureter
8
skeleton
6
eye
5
vein
1
pericardium
Project
43
AMP
Genome assembly (visualization)
40
GRCh38
39
hg19
Lab
43
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
month_released!
May, 2022
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
43 results
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DNase-seq
total RNA-seq
ChIP-seq
small RNA-seq
WGBS
tissue
muscle of arm
17
muscle of leg
13
1
1
psoas muscle
2
skeletal muscle tissue
1
1
forelimb muscle
1
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primary cell
skeletal muscle satellite cell
1
1
1
skeletal muscle cell
1
1
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