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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
39
ChIP-seq
33
DNase-seq
5
RRBS
4
Hi-C
total RNA-seq
2
small RNA-seq
1
ATAC-seq
1
WGBS
Assay category
39
DNA binding
34
DNA accessibility
6
DNA methylation
4
3D chromatin structure
2
Transcription
Target of assay
33
histone
33
histone modification
20
broad histone mark
13
narrow histone mark
6
control
Date released
43
June, 2019
26
August, 2017
8
July, 2019
7
May, 2019
March, 2020
May, 2022
1
January, 2018
Available data
64
bigWig
60
bed narrowPeak
53
bam
47
bigBed narrowPeak
46
bed broadPeak
33
bed bed3+
33
bigBed broadPeak
15
tagAlign
4
bed bedMethyl
4
bigBed bedMethyl
2
fastq
2
tsv
Organism
85
Homo sapiens
Biosample type
72
tissue
13
primary cell
Organ
580
liver
442
pancreas
316
heart
309
epithelium
292
kidney
267
brain
208
connective tissue
172
vasculature
166
blood vessel
115
limb
97
bone element
92
adipose tissue
85
artery
85
musculature of body
69
blood
69
bodily fluid
42
eye
38
nerve
24
spleen
23
embryo
21
vein
19
lung
18
ureter
12
skeleton
4
gonad
4
ovary
2
pituitary gland
1
bone marrow
1
lymph node
1
pericardium
1
skin of body
1
thymus
Project
85
AMP
Genome assembly (visualization)
66
hg19
49
GRCh38
Lab
85
AMP-T2D consortium
Audit category:
9
inconsistent ontology term
month_released!
May, 2022
March, 2020
assay_title!
total RNA-seq
BIOSAMPLE
ASSAY
85 results
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ChIP-seq
DNase-seq
RRBS
Hi-C
small RNA-seq
ATAC-seq
WGBS
tissue
skeletal muscle tissue
22
4
1
1
muscle of leg
7
13
1
muscle of arm
17
gastrocnemius medialis
4
forelimb muscle
1
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primary cell
skeletal muscle satellite cell
8
1
skeletal muscle cell
2
1
1
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