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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
238
ChIP-seq
59
DNase-seq
22
total RNA-seq
6
Hi-C
5
ATAC-seq
5
RRBS
5
small RNA-seq
3
pCHi-C
1
FAIRE-seq
1
WGBS
Assay category
238
DNA binding
65
DNA accessibility
27
Transcription
6
3D chromatin structure
6
DNA methylation
Target of assay
209
histone
209
histone modification
123
narrow histone mark
86
broad histone mark
29
control
Date released
86
October, 2019
82
November, 2017
57
June, 2019
35
May, 2019
26
August, 2017
18
July, 2019
16
October, 2017
14
February, 2020
7
March, 2020
May, 2022
2
November, 2018
1
February, 2023
1
January, 2018
Available data
270
bam
259
bigWig
243
bed narrowPeak
154
bigBed narrowPeak
133
tagAlign
81
bed broadPeak
59
bed bed3+
59
bigBed broadPeak
30
tsv
14
fastq
4
bed bedMethyl
4
bigBed bedMethyl
2
bedpe bed3+
2
hic
1
bed bed3
1
tagAlign bed3+
Organism
345
Homo sapiens
Biosample type
345
tissue
35
primary cell
Organ
547
connective tissue
488
adipose tissue
481
pancreas
321
liver
313
heart
299
kidney
265
brain
158
bone element
133
blood vessel
133
vasculature
122
limb
80
musculature of body
73
artery
56
eye
43
nerve
25
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
345
AMP
Genome assembly (visualization)
245
GRCh38
203
hg19
Lab
345
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
Audit category:
4
missing controlled_by
month_released!
May, 2022
BIOSAMPLE
ASSAY
345 results
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ChIP-seq
DNase-seq
total RNA-seq
Hi-C
ATAC-seq
RRBS
small RNA-seq
pCHi-C
FAIRE-seq
WGBS
tissue
brain
20
14
1
1
1
skeletal muscle tissue
22
1
1
4
1
layer of hippocampus
23
muscle of leg
7
13
1
caudate nucleus
15
1
1
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