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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
257
ChIP-seq
65
DNase-seq
23
total RNA-seq
9
Hi-C
7
RRBS
6
small RNA-seq
5
ATAC-seq
4
pCHi-C
3
single cell RNA-seq
1
FAIRE-seq
1
WGBS
Assay category
257
DNA binding
71
DNA accessibility
32
Transcription
9
3D chromatin structure
8
DNA methylation
Target of assay
220
histone
220
histone modification
130
narrow histone mark
90
broad histone mark
37
control
3
RNA binding protein
3
transcription factor
Date released
91
November, 2017
86
October, 2019
73
June, 2019
35
May, 2019
28
July, 2019
26
August, 2017
16
October, 2017
14
February, 2020
7
March, 2020
May, 2022
2
November, 2018
1
February, 2023
1
January, 2018
1
May, 2021
Available data
300
bam
290
bigWig
263
bed narrowPeak
174
bigBed narrowPeak
133
tagAlign
93
bed broadPeak
71
bigBed broadPeak
68
bed bed3+
35
tsv
23
fastq
6
bed bedMethyl
6
bigBed bedMethyl
3
hdf5
2
bedpe bed3+
2
hic
1
bed bed3
1
tagAlign bed3+
Organism
381
Homo sapiens
Biosample type
345
tissue
36
primary cell
Organ
842
pancreas
751
liver
684
connective tissue
491
adipose tissue
444
epithelium
393
heart
354
kidney
286
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
94
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
380
AMP
1
T1D
Genome assembly (visualization)
270
GRCh38
236
hg19
Lab
380
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
12
inconsistent ontology term
Audit category:
4
missing controlled_by
month_released!
May, 2022
BIOSAMPLE
ASSAY
381 results
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ChIP-seq
DNase-seq
total RNA-seq
Hi-C
RRBS
small RNA-seq
ATAC-seq
pCHi-C
single cell RNA-seq
FAIRE-seq
WGBS
tissue
brain
20
14
1
1
1
skeletal muscle tissue
22
1
4
1
1
layer of hippocampus
23
muscle of leg
7
13
1
caudate nucleus
15
1
1
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primary cell
skeletal muscle satellite cell
8
1
1
astrocyte of the cerebellum
3
1
1
brain microvascular endothelial cell
3
1
1
choroid plexus epithelial cell
3
1
1
skeletal muscle cell
2
1
1
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