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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1011
total RNA-seq
844
ChIP-seq
222
ATAC-seq
178
DNase-seq
173
single cell RNA-seq
87
RNA microarray
27
WGBS
27
snATAC-seq
25
pCHi-C
16
Hi-C
16
small RNA-seq
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
1200
Transcription
844
DNA binding
431
DNA accessibility
38
DNA methylation
16
3D chromatin structure
Target of assay
593
histone modification
592
histone
309
narrow histone mark
283
broad histone mark
187
control
89
transcription factor
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
545
February, 2021
282
August, 2017
242
October, 2019
229
August, 2021
193
May, 2020
163
June, 2019
120
July, 2018
111
May, 2019
95
February, 2023
82
November, 2017
77
July, 2019
76
April, 2019
May, 2022
63
October, 2018
47
September, 2023
46
December, 2017
40
March, 2020
40
May, 2021
40
November, 2019
26
November, 2018
25
February, 2020
23
October, 2017
19
April, 2020
15
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
1860
bam
1690
bigWig
1076
tsv
885
bed narrowPeak
541
bigBed narrowPeak
338
fastq
238
tagAlign
213
bed broadPeak
202
bed bed3+
176
bigBed broadPeak
150
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
2639
Homo sapiens
Biosample type
2648
tissue
944
primary cell
597
cell line
383
in vitro differentiated cells
10
stem cell
Organ
542
connective tissue
483
adipose tissue
473
pancreas
319
liver
298
kidney
268
heart
265
brain
158
bone element
130
blood vessel
130
vasculature
122
limb
80
musculature of body
72
artery
56
eye
43
nerve
25
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2551
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
1797
GRCh38
1694
hg19
Lab
2400
AMP-T2D consortium
142
Katalin Susztak, Upenn
47
KPMP
28
Kyle Gaulton, UCSD
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
91
inconsistent ontology term
27
inconsistent control
8
audit script error
Audit category:
25
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
month_released!
May, 2022
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
2648 results
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total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
single cell RNA-seq
RNA microarray
WGBS
snATAC-seq
pCHi-C
Hi-C
small RNA-seq
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
islet of Langerhans
292
69
50
1
7
4
3
1
1
4
adipose tissue
382
2
3
3
1
liver
147
144
2
1
3
1
1
1
1
kidney
49
26
75
13
64
6
1
1
1
bone element
84
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