Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
191
total RNA-seq
108
single cell RNA-seq
86
ChIP-seq
55
snATAC-seq
21
ATAC-seq
16
pCHi-C
6
WGBS
4
Hi-C
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
303
Transcription
86
DNA binding
76
DNA accessibility
6
DNA methylation
4
3D chromatin structure
Target of assay
86
histone
86
histone modification
44
broad histone mark
42
narrow histone mark
Date released
151
May, 2021
May, 2022
99
February, 2023
59
September, 2020
47
September, 2023
45
February, 2021
41
May, 2020
19
April, 2020
16
January, 2021
7
August, 2020
5
March, 2023
4
March, 2020
3
October, 2022
Available data
188
bigWig
178
bam
169
fastq
98
tsv
86
bed narrowPeak
84
tagAlign
19
zippedFastqFolder
4
hic
3
bedpe bed3+
3
cool
Organism
491
Homo sapiens
Biosample type
390
primary cell
97
tissue
7
cell line
2
stem cell
Organ
102
pancreas
72
epithelium
47
kidney
19
lung
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
AMP
235
T1D
190
HPAP
47
KPMP
19
LungMap
4
community
1
ITG
Genome assembly (visualization)
189
GRCh38
181
hg19
Lab
231
Kyle Gaulton, UCSD
190
Klaus Kaestner, Upenn
47
KPMP
19
Xin Sun, UCSD
4
AMP-T2D consortium
4
Anna Gloyn, Oxford
1
ITG
Audit category:
30
audit script error
inconsistent ontology term
month_released!
May, 2022
target.investigated_as!
control
award.project!
AMP
audit.ERROR.category!
inconsistent ontology term
BIOSAMPLE
ASSAY
496 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
single cell RNA-seq
ChIP-seq
snATAC-seq
ATAC-seq
pCHi-C
WGBS
Hi-C
CRISPR genome editing followed by DNA sequencing
HiChIP
CRISPR RNA-seq
CRISPRi RNA-seq
shRNA RNA-seq
siRNA RNA-seq
primary cell
monocyte
53
84
1
Langerhans cell
52
27
pancreatic alpha cell
42
7
6
1
exocrine cell
39
pancreatic beta cell
11
3
1
+ See 35 more…
tissue
kidney
47
islet of Langerhans
7
2
6
11
lung
9
10
pancreas
4
thymus
1
cell line
EndoC_BH1
3
2
EndoC-BH1
1
1
stem cell
SB Ad3.1
1
1
See all biosamples
Download