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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
49
ChIP-seq
36
DNase-seq
8
ATAC-seq
4
Hi-C
4
total RNA-seq
1
WGBS
Assay category
49
DNA binding
44
DNA accessibility
4
3D chromatin structure
4
Transcription
1
DNA methylation
Target of assay
49
histone
49
histone modification
34
broad histone mark
control
15
narrow histone mark
Date released
53
October, 2019
32
June, 2019
6
February, 2021
6
May, 2019
5
July, 2019
February, 2020
Available data
97
bam
92
bed narrowPeak
91
bigWig
84
bigBed narrowPeak
36
bed bed3+
36
bed broadPeak
36
bigBed broadPeak
4
tsv
1
bed bedMethyl
1
bigBed bedMethyl
Organism
102
Homo sapiens
Biosample type
102
tissue
Organ
788
pancreas
647
connective tissue
642
liver
465
adipose tissue
414
epithelium
370
heart
342
kidney
243
brain
211
vasculature
206
blood vessel
159
bone element
130
artery
102
limb
86
musculature of body
63
blood
63
bodily fluid
59
eye
31
nerve
30
embryo
20
lung
20
vein
18
ureter
17
spleen
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
102
AMP
Genome assembly (visualization)
96
GRCh38
96
hg19
Lab
102
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
month_released!
May, 2022
February, 2020
target.investigated_as!
control
BIOSAMPLE
ASSAY
102 results
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ChIP-seq
DNase-seq
ATAC-seq
Hi-C
total RNA-seq
WGBS
tissue
tibial nerve
24
2
1
4
tibial artery
18
2
1
muscle of leg
6
13
1
muscle of arm
17
gastrocnemius medialis
4
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